Publication - 2023

Publication - 2023

1. John J, Narendrakumar L, Thomas S, Nelson-Sathi S. Hybrid genome assembly and annotation of multidrug-resistant Staphylococcus aureus genotype ST672-SCCmec type IVd (2B). J Glob Antimicrob Resist. 2023 Jan 25;32:74-77. doi: 10.1016/j.jgar.2022.12.011. Epub ahead of print. PMID: 36708767.
2. Beena TB, Jesil MA, Harikumar KB. Cross-talk between AMP-activated protein kinase and the sonic hedgehog pathway in the high-fat diet triggered colorectal cancer. Arch Biochem Biophys. 2023 Feb;735:109500. doi: 10.1016/j.abb.2022.109500. Epub 2023 Jan 4. PMID: 36608915.
3. Baral I, Shirude MB, Jothi DL, Mukherjee A, Dutta D. Characterization of a Distinct State in the Continuum of Pluripotency Facilitated by Inhibition of PKCζ in Mouse Embryonic Stem Cells. Stem Cell Rev Rep. 2023 Feb 13. doi: 10.1007/s12015-023-10513-5. Epub ahead of print. PMID: 36781773.
4. Suresh D, Srinivas AN, Prashant A, Harikumar KB, Kumar DP. Therapeutic options in hepatocellular carcinoma: a comprehensive review. Clin Exp Med. 2023 Feb 13. doi: 10.1007/s10238-023-01014-3. Epub ahead of print. PMID: 36780119.
5. Vinitha Richard, Madhumathy G. Nair, Vishnu S. Jaikumar, Sara Jones, Jyothi S. Prabhu and Michael J. Kerin. Cell State Transitions and Phenotypic Heterogeneity in Luminal Breast Cancer Implicating MicroRNAs as Potential Regulators. Int. J. Mol. Sci. 2023, 24(4), 3497; https://doi.org/10.3390/ijms24043497
6. Kalaivani V, Krishna MS, Kumar AA, Satheesh G, Jaleel A. O-glycan structures in apo(a) subunit of human lipoprotein(a) suppresses the pro-angiogenic activity of galectin-1 on human umbilical vein endothelial cells. FASEB J. 2023 Mar;37(3):e22813. doi: 10.1096/fj.202201001RR. PMID: 36809652.
7. Gayathri K.G., Puja Laxmanrao Shinde, Sebastian John, Sivakumar K. C., and Rashmi Mishra. Understanding the Combined Effects of High Glucose Induced Hyper-Osmotic Stress and Oxygen Tension in the Progression of Tumourigenesis: From Mechanism to Anti-Cancer Therapeutics. Cells, 7 March 2023, 12, no. 6: 825. https://doi.org/10.3390/cells12060825.
8. Sagna A, Nair RVR, Hulyalkar N, Rajasekharan S, Nair VTG, Sivakumar KC, Suja SR, Baby S, Sreekumar E. Ethyl palmitate, an anti-chikungunya virus principle from Sauropus androgynus, a medicinal plant used to alleviate fever in ethnomedicine. J Ethnopharmacol. 2023 Mar 11:116366. doi: 10.1016/j.jep.2023.116366. Epub ahead of print. PMID: 36914036.
9. Karthika CL, Venugopal V, Sreelakshmi BJ, Krithika S, Thomas JM, Abraham M, Kartha CC, Rajavelu A, Sumi S. Oscillatory shear stress modulates Notch-mediated endothelial mesenchymal plasticity in cerebral arteriovenous malformations. Cell Mol Biol Lett. 2023 Mar 18;28(1):22. doi: 10.1186/s11658-023-00436-x. PMID: 36934253; PMCID: PMC10024393.
10. Sunil J, Narayana C, Kumari G, Jayaramulu K. Raman spectroscopy, an ideal tool for studying the physical properties and applications of metal-organic frameworks (MOFs). Chem Soc Rev. 2023 Apr 24. doi: 10.1039/d2cs01004f. Epub ahead of print. PMID: 37092318.
11. Sreejith S, Paul M, Mol SB, Induja CG, Baby CS, Kumari A, Budhwar R, Sathi SN, Radhakrishnan EK. Genomic insight into the environmental adaptations and toxigenic features of endophytic Bacillus cereus CaB1 isolated from Capsicum annuum L. 3 Biotech. 2023 Feb;13(2):68. doi: 10.1007/s13205-023-03463-9. Epub 2023 Jan 30. PMID: 36733383; PMCID: PMC9886735.
12. Bhattacharjee S, Ghosh D, Saha R, Sarkar R, Kumar S, Khokhar M, Pandey RK. Mechanism of Immune Evasion in Mosquito-Borne Diseases. Pathogens. 2023; 12(5):635.
13. Hameed J S F, Devarajan A, M S DP, Bhattacharyya A, Shirude MB, Dutta D, Karmakar P, Mukherjee A. PTEN-negative endometrial cancer cells protect their genome through enhanced DDB2 expression associated with augmented nucleotide excision repair. BMC Cancer. 2023 May 4;23(1):399. doi: 10.1186/s12885-023-10892-5. PMID: 37142958.
14. Lightson Ngashangva, Santanu Chattopadhyay. Biosensors for point-of-care testing and personalized monitoring of gastrointestinal microbiota.Front. Microbiol., 05 May 2023;DOI: 10.3389/fmicb.2023.1114707
15. Thrinath Mullapudi, Monojit Debnath, Ramajayam Govindaraj, Praveen Raj, Moinak Banerjee, Shivarama Varambally. Effects of a six-month yoga intervention on the immune-inflammatory pathway in antipsychotic-stabilized schizophrenia patients: A randomized controlled trial. Asian Journal of Psychiatry https://doi.org/10.1016/j.ajp.2023.103636
16. V S J, Jaikumar VS, Mehra P, Thulaseedharan T, Vinod VM, Ramachandran S. Differential expression of lipid metabolic genes in hypercholesterolemic rabbit placenta predisposes the offspring to develop atherosclerosis in early adulthood. Life Sci. 2023 May 31;327:121823. doi: 10.1016/j.lfs.2023.121823. Epub ahead of print. PMID: 37263488.
17. Jayalekshmi VS, Jagannath RS, Sreelekshmi S, Rafeekha P, Vidyalekshmy R, Ramachandran S. Maternal hypercholesterolemia during gestation is associated with elevated lipid levels of two-day-old neonates. Mol Cell Biochem. 2023 Apr 19. doi: 10.1007/s11010-023-04739-7. Epub ahead of print. PMID: 37074503.
18. Baby K, Maity S, Mehta CH, Nayak UY, Shenoy GG, Pai KSR, Harikumar KB, Nayak Y. Computational drug repurposing of Akt-1 allosteric inhibitors for non-small cell lung cancer. Sci Rep. 2023 ;13(1):7947.
19. Beena TB, Jesil Mathew A Harikumar KB, Safeeda E. Integrative Analysis of the AMPK subunits in colorectal adeno carcinoma. Asian Pac J Cancer Prev. 2023;24(4):1159-1171.
20. Mullapudi T, Debnath M, Govindaraj R, Raj P, Banerjee M, Varambally S. Effects of a six-month yoga intervention on the immune-inflammatory pathway in antipsychotic-stabilized schizophrenia patients: A randomized controlled trial. Asian J Psychiatr. 2023 May 24;86:103636. doi: 10.1016/j.ajp.2023.103636. Epub ahead of print. PMID: 37290243.
21. Pavuluri H, Jose M, Fasaludeen A, Sundaram S, Radhakrishnan A, Banerjee M, Menon RN. Arginase deficiency-An unheralded cause of developmental epileptic encephalopathy. Epileptic Disord. 2023 May 27. doi: 10.1002/epd2.20081. Epub ahead of print. PMID: 37243436.
22. Karthik Subramanian and Anirban Banerjee. Editorial on the Research Topic Deceiving the Host: Mechanisms of Immune Evasion and Survival By Pneumococcal Bacteria. Frontiers in Cellular and Infection Microbiology. 19 June 2023 | https://doi.org/10.3389/fcimb.2023.1231253
23. Varghese GR, Patra D, Jaikumar VS, Rajan A, Latha NR, Srinivas P. βhCG mediates immune suppression through upregulation of CD11b⁺Gr1⁺ myeloid derived suppressor cells, CD206+ M2 macrophages, and CD4⁺FOXP3⁺ regulatory T-cells in BRCA1 deficient breast cancers. Immunology. 2023 Jun 20. doi: 10.1111/imm.13673. Epub ahead of print. PMID: 37340549.
24. Vini R, Jaikumar VS, Remadevi V, Ravindran S, Azeez JM, Sasikumar A, Sundaram S, Sreeja S. Urolithin A: A promising selective estrogen receptor modulator and 27-hydroxycholesterol attenuator in breast cancer. Phytother Res. 2023 Jun 21. doi: 10.1002/ptr.7919. Epub ahead of print. PMID: 37345359.
25. Sharanya CS, Abhithaj J, Arun KG, Eeda KR, Bhat V, Variyar EJ, Sabu A, Haridas M. Lipoxygenase inhibitory synthetic derivatives of methyl gallate regulate gene expressions of COX-2 and cytokines to reduce animal model arthritis. Sci Rep. 2023 Jun 30;13(1):10644. doi: 10.1038/s41598-023-37613-z. PMID: 37391468
26. Prakash A, Banerjee M. An interpretable block-attention network for identifying regulatory feature interactions. Brief Bioinform. 2023 Jul 3:bbad250. doi: 10.1093/bib/bbad250. Epub ahead of print. PMID: 37401370.
27. Modak A, Mishra SR, Awasthi M, Sreedevi S, Sobha A, Aravind A, Kuppusamy K, Sreekumar E. Higher-temperature-adapted dengue virus serotype 2 strain exhibits enhanced virulence in AG129 mouse model. FASEB J. 2023 Aug;37(8):e23062. doi: 10.1096/fj.202300098R. PMID: 37389962.
28. Dhiraj Dutta, Rajshree R. Nair, Sreejith Mangalath, S. Asha Nair*, Joshy Joseph, Pranjal Gogoi*, and Danaboyina Ramaiah. Biocompatible Aza-BODIPY-Biotin Conjugates for Photodynamic Therapy of Cancer ACS Omega June 21, 2023 doi.org/10.1021/acsomega.3c02416
29. Pradeep P, Sivakumar KC, Sreekumar E. Host Factor Nucleophosmin 1 (NPM1/B23) Exerts Antiviral Effects against Chikungunya Virus by Its Interaction with Viral Nonstructural Protein 3. Microbiol Spectr. 2023 Jul 6:e0537122. doi: 10.1128/spectrum.05371-22. Epub ahead of print. PMID: 37409962.
30. Reghunandanan K, T P A, Krishnan N, K M D, Prasad R, Nelson-Sathi S, Chandramohanadas R. Search for novel Plasmodium falciparum PfATP4 inhibitors from the MMV Pandemic Response Box through a virtual screening approach. J Biomol Struct Dyn. 2023 Jul 9:1-12. doi: 10.1080/07391102.2023.2232459. Epub ahead of print. PMID: 37424150.
31. Varghese PC, Dutta D. Protocol for isolation of mouse pre-implantation embryos for gene expression analysis. STAR Protoc. 2023 Jul 25;4(3):102479. doi: 10.1016/j.xpro.2023.102479. Epub ahead of print. PMID: 37494178.
32. Jain P, Kumari G, Bhogra M, Yanda P, Joseph B, Waghmare UV, Narayana C. Raman Evidence of Multiple Adsorption Sites and Structural Transformation in ZIF-4. Inorg Chem. 2023 May 22;62(20):7703-7715. doi: 10.1021/acs.inorgchem.3c00067. Epub 2023 May 10. PMID: 37163305.
33. Jancy SV, Lupitha SS, Chandrasekharan A, Varadarajan SN, Nelson-Sathi S, Prasad R, Jones S, Easwaran S, Darvin P, Sivasailam A, Santhoshkumar TR. A high-throughput screening system for SARS-CoV-2 entry inhibition, syncytia formation and cell toxicity. Biol Proced Online. 2023 Jul 26;25(1):22. doi: 10.1186/s12575-023-00214-1. PMID: 37495994; PMCID: PMC10373420.
34. Anjali Devi Das, Vidhu K, Smitha Devi S, and Kozhinjampara R Mahendran. Synthetic α-Helical Nanopore Reactor for Chemical Sensing JACS Au August 23, 2023 https://doi.org/10.1021/jacsau.3c00221
35. Ravindran Vini, Asha Lekshmi, Swathy Ravindran, Jissa Vinoda Thulaseedharan, Kunjuraman Sujathan, Arumugam Rajavelu, Sreeharshan Sreeja. 27-Hydroxycholesterol represses G9a expression via oestrogen receptor alpha in breast cancer Journal of Cellular and Molecular Medicine Online 23 August 2023 https://doi.org/10.1111/jcmm.17882
36. Sabira Mohammed, Anu Bindu, Arun Viswanathan, Kuzhuvelil B. Harikumar. Sphingosine 1-phosphate signaling during infection and immunity. Progress in Lipid Research 28 August 2023 https://doi.org/10.1016/j.plipres.2023.101251
37. Chouhan D, Retnakumar RJ, Devi TB, Dharmaseelan S, Alexander SM, Devadas K, Chattopadhyay S, Nair GB, Pillai MR. Unusually high clarithromycin resistance in Mycobacterium abscessus subsp. abscessus isolated from human gastric epithelium. Front Microbiol. 2023 Aug 28;14:1193380. doi: 10.3389/fmicb.2023.1193380. PMID: 37700866
38. Poyyakkara A, Raji GR, Padmaja KP, Ramachandran V, Changmai U, Edatt L, Punathil R, Kumar VBS. Integrin β4 induced epithelial-to-mesenchymal transition involves miR-383 mediated regulation of GATA6 levels. Mol Biol Rep. 2023 Sep 1. doi: 10.1007/s11033-023-08682-0. Epub ahead of print. PMID: 37656269.
39. Jagdev MK, Tompa DR, Ling LL, Peoples AJ, Dandapat J, Mohapatra C, Lewis K, Vasudevan D. Crystal structure of the N-terminal domain of MtClpC1 in complex with the anti-mycobacterial natural peptide Lassomycin. Int J Biol Macromol. 2023 Sep 6;253(Pt 2):126771. doi: 10.1016/j.ijbiomac.2023.126771. Epub ahead of print. PMID: 37683752.
40. Rathore AS, Gupta KK, Govindaraj SK, Ajmani A, Arivalagan J, Anto RJ, Kalishwaralal K, Chandran SA. Targeting BRF2: insights from in silico screening and molecular dynamic simulations. J Biomol Struct Dyn. 2023 Sep 13:1-13. doi: 10.1080/07391102.2023.2256884. Epub ahead of print. PMID: 37705251.
41. Rathore AS, Gupta KK, Govindaraj SK, Ajmani A, Arivalagan J, Anto RJ, Kalishwaralal K, Chandran SA. Targeting BRF2: insights from in silico screening and molecular dynamic simulations. J Biomol Struct Dyn. 2023 Sep 13:1-13. doi: 10.1080/07391102.2023.2256884. Epub ahead of print. PMID: 37705251.
42. Archana P. Thankamony, Sonny Ramkomuth, Shikha T. Ramesh, Reshma Murali, Priyanka Chakraborty, Nitheesh Karthikeyan, Binitha Anu Varghese, Vishnu Sunil Jaikumar, Mohit Kumar Jolly, Alexander Swarbrick, Radhika Nair. Phenotypic heterogeneity drives differential disease outcome in a mouse model of triple negative breast cancer. Frontiers in Oncology https://www.frontiersin.org/articles/10.3389/fonc.2023.1230647
43. Chattopadhyay S, Murugaiyan G, Hajela N and Ramakrishna BS (2023) Editorial: Benefiting from microbes: challenges in getting the 'pros' and avoiding the 'cons'. Front. Gastroenterol. 2:1293448. doi: 10.3389/fgstr.2023.1293448
44. Salini S, Muralikrishnan B, Bhat SG, Ghate SD, Rao RSP, Kumar RA, Kurthkoti K. Overexpression of a membrane transport system MSMEG_1381 and MSMEG_1382 confers multidrug resistance in Mycobacterium smegmatis. Microb Pathog. 2023 Oct 12;185:106384. doi: 10.1016/j.micpath.2023.106384. Epub ahead of print. PMID: 37838146.
45. Issac J, Raveendran PS, Kunnummal M, Angelin M, Ravindran S, Basu B, Das AV. RXR agonist, Bexarotene, effectively reduces drug resistance via regulation of RFX1 in embryonic carcinoma cells. Biochim Biophys Acta Mol Cell Res. 2023 Oct;1870(7):119510. doi: 10.1016/j.bbamcr.2023.119510. Epub 2023 Jun 9. PMID: 37301270.
46. Kunnummal M, Raveendran PS, Basu B, Rani SV, Paul RA, Kuppusamy K, Angelin M, Issac J, James J, Das AV. HPV16 E6/E7-mediated regulation of PiwiL1 expression induces tumorigenesis in cervical cancer cells. Cell Oncol (Dordr). 2023 Dec 1. doi: 10.1007/s13402-023-00904-8. Epub ahead of print. PMID: 38036929.
47. Navyasree KV, Ramesh ST, Umasankar PK. Cholesterol regulates insulin-induced mTORC1 signaling. J Cell Sci. 2023 Nov 15;136(22):jcs261402. doi: 10.1242/jcs.261402. Epub 2023 Nov 29. PMID: 37921368.